Trouble!

So after a 100mile ride, about mile #80 bike lost power and did 2 big backfires, but rode home ok the last 20. I take the bike out again a day later and the bike didn't feel right or like it did have a loss of power. So today I cleaned out the carbs from back to front and inside and out, also cleaned and scrubbed the coils and grounds. Bike now runs rough and the carbs are acting really funny... I guess im going back to basics to figure out what's wrong now...